font
Thavanesan, Navamayooran; Naiseh, Mohammad; Terol, Miguel; Rahman, Saqib Andrew; Hill, Samuel Luke; Parfitt, Charlotte; Walters, Zoë S; Ramchurn, Sarvapali; Markar, Sheraz; Owen, Richard; Maynard, Nick; Azim, Tayyaba; Belkatir, Zehor; Perez, Elvira Vallejos; McCord, Mimi; Underwood, Tim; Vigneswaran, Ganesh
The oesophageal cancer multi-disciplinary tool: a co-designed, externally validated, machine learning clinical decision support system Journal Article
In: EClinicalMedicine, vol. 89, pp. 103527, 2025, (For the purposes of open access, the authors have applied a Creative Commons attribution license (CC-BY) to any Author Accepted Manuscript version arising from this submission.).
Abstract | Links | BibTeX | Tags: Artificial Intelligence, Decision support tool, machine learning, MDT, Multidisciplinary teams, Oesophageal cancer
@article{soton506614,
title = {The oesophageal cancer multi-disciplinary tool: a co-designed, externally validated, machine learning clinical decision support system},
author = {Navamayooran Thavanesan and Mohammad Naiseh and Miguel Terol and Saqib Andrew Rahman and Samuel Luke Hill and Charlotte Parfitt and Zoë S Walters and Sarvapali Ramchurn and Sheraz Markar and Richard Owen and Nick Maynard and Tayyaba Azim and Zehor Belkatir and Elvira Vallejos Perez and Mimi McCord and Tim Underwood and Ganesh Vigneswaran},
url = {https://eprints.soton.ac.uk/506614/},
year = {2025},
date = {2025-09-01},
journal = {EClinicalMedicine},
volume = {89},
pages = {103527},
abstract = {ensuremath<pensuremath>BACKGROUND: The oesophageal cancer (OC) multi-disciplinary team (MDT) operates under significant pressures, handling complex decision-making. Machine learning (ML) can learn complex decision-making paradigms to improve efficiency, consistency, and cost if trained and deployed responsibly. We present an externally validated ML-based clinical decision support system (CDSS) designed to predict OC MDT treatment decisions and prognosticate palliative scenarios, co-designed using Responsible Research and Innovation (RRI) principles.ensuremath</pensuremath>ensuremath<pensuremath>METHODS: Clinicopathological data collected from 1931 patients between 4th September 2009, and 8th November 2022 were used to test and validate models trained through four ML algorithms to predict curative and palliative treatment pathways along with palliative prognosis. 953 OC cases treated at University Hospitals Southampton (UHS) were used to train ML models which were externally validated on 978 OC cases from Oxford University Hospitals (OUH). Model performance was evaluated using Area Under Curve (AUC) for treatment classifiers and calibration curves for survival models. A parallel RRI program at the University of Southampton (United Kingdom) combining clinician interviews and inter-disciplinary workshops was conducted between 16.3.23 and 23.5.24. The RRI program comprised a group of 17 domain experts comprising programmers, computer scientists, clinicians and patient representatives to allow end-users to contribute towards the co-design of the CDSS user interface.ensuremath</pensuremath>ensuremath<pensuremath>FINDINGS: Cohorts differed in baseline characteristics, with the external cohort (OUH) being younger, having better performance status, and a higher prevalence of pulmonary and vascular disease. Despite these differences, on internal validation (UHS cohort) mean AUCs for the primary treatment model were: MLR 0.905 $±$ 0.048, XGB 0.909 $±$ 0.044 and RF 0.883 $±$ 0.059 (k = 5 cross-validation) and MLR 0.866 (95% CI 0.866-0.867), XGB 0.863 (0.862-0.864), RF 0.863 (0.867-0.868) on bootstrapped resampling. For the palliative classifier, mean AUCs were: MLR 0.805 $±$ 0.096, XGB 0.815 $±$ 0.081 and RF 0.793 $±$ 0.083 (k = 5 cross-validation) and MLR 0.736 (95% CI 0.734-0.737), XGB 0.799 (0.798-0.800), RF 0.781 (0.778-0.782) on bootstrapped resampling. On external validation (OUH cohort), AUCs were MLR 0.894, XGB 0.887 and RF 0.891 for the primary treatment model and MLR 0.711, XGB 0.742 and RF 0.730 for the palliative treatment classifier. Predicted survival probability from the palliative survival model was well calibrated over the first 12 months post-diagnosis in both cohorts. The RRI program provided a collaborative environment leading to valuable modifications to the CDSS including prediction explanations, visual aids for survival and integrated education for users producing a user-friendly and quick to use tool.ensuremath</pensuremath>ensuremath<pensuremath>INTERPRETATION: We present a novel, responsibly developed, externally validated AI CDSS trained to predict oesophageal cancer MDT decisions. It represents the foundations of a transformative application of ML, personalised, consistent and efficient MDT decision-support within OC which aligns to RRI principles.ensuremath</pensuremath>ensuremath<pensuremath>FUNDING: Doctoral Studentship for NT (Institute for Life Sciences (University of Southampton) & University Hospital Southampton), UKRI TAS Pump-Priming Grant (TAS_PP_00167).ensuremath</pensuremath>},
note = {For the purposes of open access, the authors have applied a Creative Commons attribution license (CC-BY) to any Author Accepted Manuscript version arising from this submission.},
keywords = {Artificial Intelligence, Decision support tool, machine learning, MDT, Multidisciplinary teams, Oesophageal cancer},
pubstate = {published},
tppubtype = {article}
}
Thavanesan, Navamayooran; Farahi, Arya; Parfitt, Charlotte; Belkhatir, Zehor; Azim, Tayyaba; Vallejos, Elvira Perez; Walters, Zoë; Ramchurn, Sarvapali; Underwood, Timothy J.; Vigneswaran, Ganesh
Insights from explainable AI in oesophageal cancer team decisions Journal Article
In: Computers in Biology and Medicine, vol. 180, 2024, (For the purpose of open access, the authors have applied a Creative Commons attribution license (CC-BY) to any Author Accepted Manuscript version arising from this submission.).
Abstract | Links | BibTeX | Tags: Decision-making, machine learning, Multidisciplinary teams, Oesophageal cancer
@article{soton493238,
title = {Insights from explainable AI in oesophageal cancer team decisions},
author = {Navamayooran Thavanesan and Arya Farahi and Charlotte Parfitt and Zehor Belkhatir and Tayyaba Azim and Elvira Perez Vallejos and Zoë Walters and Sarvapali Ramchurn and Timothy J. Underwood and Ganesh Vigneswaran},
url = {https://eprints.soton.ac.uk/493238/},
year = {2024},
date = {2024-08-01},
journal = {Computers in Biology and Medicine},
volume = {180},
abstract = {ensuremath<pensuremath>Background: clinician-led quality control into oncological decision-making is crucial for optimising patient care. Explainable artificial intelligence (XAI) techniques provide data-driven approaches to unravel how clinical variables influence this decision-making. We applied global XAI techniques to examine the impact of key clinical decision-drivers when mapped by a machine learning (ML) model, on the likelihood of receiving different oesophageal cancer (OC) treatment modalities by the multidisciplinary team (MDT).ensuremath</pensuremath>ensuremath<pensuremath>Methods: retrospective analysis of 893 OC patients managed between 2010 and 2022 at our tertiary unit, used a random forests (RF) classifier to predict four possible treatment pathways as determined by the MDT: neoadjuvant chemotherapy followed by surgery (NACT + S), neoadjuvant chemoradiotherapy followed by surgery (NACRT + S), surgery-alone, and palliative management. Variable importance and partial dependence (PD) analyses then examined the influence of targeted high-ranking clinical variables within the ML model on treatment decisions as a surrogate model of the MDT decision-making dynamic.�ensuremath</pensuremath>ensuremath<pensuremath>Results: amongst guideline-variables known to determine treatments, such as Tumour-Node-Metastasis (TNM) staging, age also proved highly important to the RF model (16.1 % of total importance) on variable importance analysis. PD subsequently revealed that predicted probabilities for all treatment modalities change significantly after 75 years (p < 0.001). Likelihood of surgery-alone and palliative therapies increased for patients aged 75?85yrs but lowered for NACT/NACRT. Performance status divided patients into two clusters which influenced all predicted outcomes in conjunction with age.�ensuremath</pensuremath>ensuremath<pensuremath>Conclusion: XAI techniques delineate the relationship between clinical factors and OC treatment decisions. These techniques identify advanced age as heavily influencing decisions based on our model with a greater role in patients with specific tumour characteristics. This study methodology provides the means for exploring conscious/subconscious bias and interrogating inconsistencies in team-based decision-making within the era of AI-driven decision support.ensuremath</pensuremath>},
note = {For the purpose of open access, the authors have applied a Creative Commons attribution license (CC-BY) to any Author Accepted Manuscript version arising from this submission.},
keywords = {Decision-making, machine learning, Multidisciplinary teams, Oesophageal cancer},
pubstate = {published},
tppubtype = {article}
}
Thavanesan, Navamayooran; Naiseh, Mohammad; Terol, Miguel; Rahman, Saqib Andrew; Hill, Samuel Luke; Parfitt, Charlotte; Walters, Zoë S; Ramchurn, Sarvapali; Markar, Sheraz; Owen, Richard; Maynard, Nick; Azim, Tayyaba; Belkatir, Zehor; Perez, Elvira Vallejos; McCord, Mimi; Underwood, Tim; Vigneswaran, Ganesh
The oesophageal cancer multi-disciplinary tool: a co-designed, externally validated, machine learning clinical decision support system Journal Article
In: EClinicalMedicine, vol. 89, pp. 103527, 2025, (For the purposes of open access, the authors have applied a Creative Commons attribution license (CC-BY) to any Author Accepted Manuscript version arising from this submission.).
@article{soton506614,
title = {The oesophageal cancer multi-disciplinary tool: a co-designed, externally validated, machine learning clinical decision support system},
author = {Navamayooran Thavanesan and Mohammad Naiseh and Miguel Terol and Saqib Andrew Rahman and Samuel Luke Hill and Charlotte Parfitt and Zoë S Walters and Sarvapali Ramchurn and Sheraz Markar and Richard Owen and Nick Maynard and Tayyaba Azim and Zehor Belkatir and Elvira Vallejos Perez and Mimi McCord and Tim Underwood and Ganesh Vigneswaran},
url = {https://eprints.soton.ac.uk/506614/},
year = {2025},
date = {2025-09-01},
journal = {EClinicalMedicine},
volume = {89},
pages = {103527},
abstract = {ensuremath<pensuremath>BACKGROUND: The oesophageal cancer (OC) multi-disciplinary team (MDT) operates under significant pressures, handling complex decision-making. Machine learning (ML) can learn complex decision-making paradigms to improve efficiency, consistency, and cost if trained and deployed responsibly. We present an externally validated ML-based clinical decision support system (CDSS) designed to predict OC MDT treatment decisions and prognosticate palliative scenarios, co-designed using Responsible Research and Innovation (RRI) principles.ensuremath</pensuremath>ensuremath<pensuremath>METHODS: Clinicopathological data collected from 1931 patients between 4th September 2009, and 8th November 2022 were used to test and validate models trained through four ML algorithms to predict curative and palliative treatment pathways along with palliative prognosis. 953 OC cases treated at University Hospitals Southampton (UHS) were used to train ML models which were externally validated on 978 OC cases from Oxford University Hospitals (OUH). Model performance was evaluated using Area Under Curve (AUC) for treatment classifiers and calibration curves for survival models. A parallel RRI program at the University of Southampton (United Kingdom) combining clinician interviews and inter-disciplinary workshops was conducted between 16.3.23 and 23.5.24. The RRI program comprised a group of 17 domain experts comprising programmers, computer scientists, clinicians and patient representatives to allow end-users to contribute towards the co-design of the CDSS user interface.ensuremath</pensuremath>ensuremath<pensuremath>FINDINGS: Cohorts differed in baseline characteristics, with the external cohort (OUH) being younger, having better performance status, and a higher prevalence of pulmonary and vascular disease. Despite these differences, on internal validation (UHS cohort) mean AUCs for the primary treatment model were: MLR 0.905 $±$ 0.048, XGB 0.909 $±$ 0.044 and RF 0.883 $±$ 0.059 (k = 5 cross-validation) and MLR 0.866 (95% CI 0.866-0.867), XGB 0.863 (0.862-0.864), RF 0.863 (0.867-0.868) on bootstrapped resampling. For the palliative classifier, mean AUCs were: MLR 0.805 $±$ 0.096, XGB 0.815 $±$ 0.081 and RF 0.793 $±$ 0.083 (k = 5 cross-validation) and MLR 0.736 (95% CI 0.734-0.737), XGB 0.799 (0.798-0.800), RF 0.781 (0.778-0.782) on bootstrapped resampling. On external validation (OUH cohort), AUCs were MLR 0.894, XGB 0.887 and RF 0.891 for the primary treatment model and MLR 0.711, XGB 0.742 and RF 0.730 for the palliative treatment classifier. Predicted survival probability from the palliative survival model was well calibrated over the first 12 months post-diagnosis in both cohorts. The RRI program provided a collaborative environment leading to valuable modifications to the CDSS including prediction explanations, visual aids for survival and integrated education for users producing a user-friendly and quick to use tool.ensuremath</pensuremath>ensuremath<pensuremath>INTERPRETATION: We present a novel, responsibly developed, externally validated AI CDSS trained to predict oesophageal cancer MDT decisions. It represents the foundations of a transformative application of ML, personalised, consistent and efficient MDT decision-support within OC which aligns to RRI principles.ensuremath</pensuremath>ensuremath<pensuremath>FUNDING: Doctoral Studentship for NT (Institute for Life Sciences (University of Southampton) & University Hospital Southampton), UKRI TAS Pump-Priming Grant (TAS_PP_00167).ensuremath</pensuremath>},
note = {For the purposes of open access, the authors have applied a Creative Commons attribution license (CC-BY) to any Author Accepted Manuscript version arising from this submission.},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Thavanesan, Navamayooran; Farahi, Arya; Parfitt, Charlotte; Belkhatir, Zehor; Azim, Tayyaba; Vallejos, Elvira Perez; Walters, Zoë; Ramchurn, Sarvapali; Underwood, Timothy J.; Vigneswaran, Ganesh
Insights from explainable AI in oesophageal cancer team decisions Journal Article
In: Computers in Biology and Medicine, vol. 180, 2024, (For the purpose of open access, the authors have applied a Creative Commons attribution license (CC-BY) to any Author Accepted Manuscript version arising from this submission.).
@article{soton493238,
title = {Insights from explainable AI in oesophageal cancer team decisions},
author = {Navamayooran Thavanesan and Arya Farahi and Charlotte Parfitt and Zehor Belkhatir and Tayyaba Azim and Elvira Perez Vallejos and Zoë Walters and Sarvapali Ramchurn and Timothy J. Underwood and Ganesh Vigneswaran},
url = {https://eprints.soton.ac.uk/493238/},
year = {2024},
date = {2024-08-01},
journal = {Computers in Biology and Medicine},
volume = {180},
abstract = {ensuremath<pensuremath>Background: clinician-led quality control into oncological decision-making is crucial for optimising patient care. Explainable artificial intelligence (XAI) techniques provide data-driven approaches to unravel how clinical variables influence this decision-making. We applied global XAI techniques to examine the impact of key clinical decision-drivers when mapped by a machine learning (ML) model, on the likelihood of receiving different oesophageal cancer (OC) treatment modalities by the multidisciplinary team (MDT).ensuremath</pensuremath>ensuremath<pensuremath>Methods: retrospective analysis of 893 OC patients managed between 2010 and 2022 at our tertiary unit, used a random forests (RF) classifier to predict four possible treatment pathways as determined by the MDT: neoadjuvant chemotherapy followed by surgery (NACT + S), neoadjuvant chemoradiotherapy followed by surgery (NACRT + S), surgery-alone, and palliative management. Variable importance and partial dependence (PD) analyses then examined the influence of targeted high-ranking clinical variables within the ML model on treatment decisions as a surrogate model of the MDT decision-making dynamic.�ensuremath</pensuremath>ensuremath<pensuremath>Results: amongst guideline-variables known to determine treatments, such as Tumour-Node-Metastasis (TNM) staging, age also proved highly important to the RF model (16.1 % of total importance) on variable importance analysis. PD subsequently revealed that predicted probabilities for all treatment modalities change significantly after 75 years (p < 0.001). Likelihood of surgery-alone and palliative therapies increased for patients aged 75?85yrs but lowered for NACT/NACRT. Performance status divided patients into two clusters which influenced all predicted outcomes in conjunction with age.�ensuremath</pensuremath>ensuremath<pensuremath>Conclusion: XAI techniques delineate the relationship between clinical factors and OC treatment decisions. These techniques identify advanced age as heavily influencing decisions based on our model with a greater role in patients with specific tumour characteristics. This study methodology provides the means for exploring conscious/subconscious bias and interrogating inconsistencies in team-based decision-making within the era of AI-driven decision support.ensuremath</pensuremath>},
note = {For the purpose of open access, the authors have applied a Creative Commons attribution license (CC-BY) to any Author Accepted Manuscript version arising from this submission.},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Thavanesan, Navamayooran; Naiseh, Mohammad; Terol, Miguel; Rahman, Saqib Andrew; Hill, Samuel Luke; Parfitt, Charlotte; Walters, Zoë S; Ramchurn, Sarvapali; Markar, Sheraz; Owen, Richard; Maynard, Nick; Azim, Tayyaba; Belkatir, Zehor; Perez, Elvira Vallejos; McCord, Mimi; Underwood, Tim; Vigneswaran, Ganesh
The oesophageal cancer multi-disciplinary tool: a co-designed, externally validated, machine learning clinical decision support system Journal Article
In: EClinicalMedicine, vol. 89, pp. 103527, 2025, (For the purposes of open access, the authors have applied a Creative Commons attribution license (CC-BY) to any Author Accepted Manuscript version arising from this submission.).
Abstract | Links | BibTeX | Tags: Artificial Intelligence, Decision support tool, machine learning, MDT, Multidisciplinary teams, Oesophageal cancer
@article{soton506614,
title = {The oesophageal cancer multi-disciplinary tool: a co-designed, externally validated, machine learning clinical decision support system},
author = {Navamayooran Thavanesan and Mohammad Naiseh and Miguel Terol and Saqib Andrew Rahman and Samuel Luke Hill and Charlotte Parfitt and Zoë S Walters and Sarvapali Ramchurn and Sheraz Markar and Richard Owen and Nick Maynard and Tayyaba Azim and Zehor Belkatir and Elvira Vallejos Perez and Mimi McCord and Tim Underwood and Ganesh Vigneswaran},
url = {https://eprints.soton.ac.uk/506614/},
year = {2025},
date = {2025-09-01},
journal = {EClinicalMedicine},
volume = {89},
pages = {103527},
abstract = {ensuremath<pensuremath>BACKGROUND: The oesophageal cancer (OC) multi-disciplinary team (MDT) operates under significant pressures, handling complex decision-making. Machine learning (ML) can learn complex decision-making paradigms to improve efficiency, consistency, and cost if trained and deployed responsibly. We present an externally validated ML-based clinical decision support system (CDSS) designed to predict OC MDT treatment decisions and prognosticate palliative scenarios, co-designed using Responsible Research and Innovation (RRI) principles.ensuremath</pensuremath>ensuremath<pensuremath>METHODS: Clinicopathological data collected from 1931 patients between 4th September 2009, and 8th November 2022 were used to test and validate models trained through four ML algorithms to predict curative and palliative treatment pathways along with palliative prognosis. 953 OC cases treated at University Hospitals Southampton (UHS) were used to train ML models which were externally validated on 978 OC cases from Oxford University Hospitals (OUH). Model performance was evaluated using Area Under Curve (AUC) for treatment classifiers and calibration curves for survival models. A parallel RRI program at the University of Southampton (United Kingdom) combining clinician interviews and inter-disciplinary workshops was conducted between 16.3.23 and 23.5.24. The RRI program comprised a group of 17 domain experts comprising programmers, computer scientists, clinicians and patient representatives to allow end-users to contribute towards the co-design of the CDSS user interface.ensuremath</pensuremath>ensuremath<pensuremath>FINDINGS: Cohorts differed in baseline characteristics, with the external cohort (OUH) being younger, having better performance status, and a higher prevalence of pulmonary and vascular disease. Despite these differences, on internal validation (UHS cohort) mean AUCs for the primary treatment model were: MLR 0.905 $±$ 0.048, XGB 0.909 $±$ 0.044 and RF 0.883 $±$ 0.059 (k = 5 cross-validation) and MLR 0.866 (95% CI 0.866-0.867), XGB 0.863 (0.862-0.864), RF 0.863 (0.867-0.868) on bootstrapped resampling. For the palliative classifier, mean AUCs were: MLR 0.805 $±$ 0.096, XGB 0.815 $±$ 0.081 and RF 0.793 $±$ 0.083 (k = 5 cross-validation) and MLR 0.736 (95% CI 0.734-0.737), XGB 0.799 (0.798-0.800), RF 0.781 (0.778-0.782) on bootstrapped resampling. On external validation (OUH cohort), AUCs were MLR 0.894, XGB 0.887 and RF 0.891 for the primary treatment model and MLR 0.711, XGB 0.742 and RF 0.730 for the palliative treatment classifier. Predicted survival probability from the palliative survival model was well calibrated over the first 12 months post-diagnosis in both cohorts. The RRI program provided a collaborative environment leading to valuable modifications to the CDSS including prediction explanations, visual aids for survival and integrated education for users producing a user-friendly and quick to use tool.ensuremath</pensuremath>ensuremath<pensuremath>INTERPRETATION: We present a novel, responsibly developed, externally validated AI CDSS trained to predict oesophageal cancer MDT decisions. It represents the foundations of a transformative application of ML, personalised, consistent and efficient MDT decision-support within OC which aligns to RRI principles.ensuremath</pensuremath>ensuremath<pensuremath>FUNDING: Doctoral Studentship for NT (Institute for Life Sciences (University of Southampton) & University Hospital Southampton), UKRI TAS Pump-Priming Grant (TAS_PP_00167).ensuremath</pensuremath>},
note = {For the purposes of open access, the authors have applied a Creative Commons attribution license (CC-BY) to any Author Accepted Manuscript version arising from this submission.},
keywords = {Artificial Intelligence, Decision support tool, machine learning, MDT, Multidisciplinary teams, Oesophageal cancer},
pubstate = {published},
tppubtype = {article}
}
Thavanesan, Navamayooran; Farahi, Arya; Parfitt, Charlotte; Belkhatir, Zehor; Azim, Tayyaba; Vallejos, Elvira Perez; Walters, Zoë; Ramchurn, Sarvapali; Underwood, Timothy J.; Vigneswaran, Ganesh
Insights from explainable AI in oesophageal cancer team decisions Journal Article
In: Computers in Biology and Medicine, vol. 180, 2024, (For the purpose of open access, the authors have applied a Creative Commons attribution license (CC-BY) to any Author Accepted Manuscript version arising from this submission.).
Abstract | Links | BibTeX | Tags: Decision-making, machine learning, Multidisciplinary teams, Oesophageal cancer
@article{soton493238,
title = {Insights from explainable AI in oesophageal cancer team decisions},
author = {Navamayooran Thavanesan and Arya Farahi and Charlotte Parfitt and Zehor Belkhatir and Tayyaba Azim and Elvira Perez Vallejos and Zoë Walters and Sarvapali Ramchurn and Timothy J. Underwood and Ganesh Vigneswaran},
url = {https://eprints.soton.ac.uk/493238/},
year = {2024},
date = {2024-08-01},
journal = {Computers in Biology and Medicine},
volume = {180},
abstract = {ensuremath<pensuremath>Background: clinician-led quality control into oncological decision-making is crucial for optimising patient care. Explainable artificial intelligence (XAI) techniques provide data-driven approaches to unravel how clinical variables influence this decision-making. We applied global XAI techniques to examine the impact of key clinical decision-drivers when mapped by a machine learning (ML) model, on the likelihood of receiving different oesophageal cancer (OC) treatment modalities by the multidisciplinary team (MDT).ensuremath</pensuremath>ensuremath<pensuremath>Methods: retrospective analysis of 893 OC patients managed between 2010 and 2022 at our tertiary unit, used a random forests (RF) classifier to predict four possible treatment pathways as determined by the MDT: neoadjuvant chemotherapy followed by surgery (NACT + S), neoadjuvant chemoradiotherapy followed by surgery (NACRT + S), surgery-alone, and palliative management. Variable importance and partial dependence (PD) analyses then examined the influence of targeted high-ranking clinical variables within the ML model on treatment decisions as a surrogate model of the MDT decision-making dynamic.�ensuremath</pensuremath>ensuremath<pensuremath>Results: amongst guideline-variables known to determine treatments, such as Tumour-Node-Metastasis (TNM) staging, age also proved highly important to the RF model (16.1 % of total importance) on variable importance analysis. PD subsequently revealed that predicted probabilities for all treatment modalities change significantly after 75 years (p < 0.001). Likelihood of surgery-alone and palliative therapies increased for patients aged 75?85yrs but lowered for NACT/NACRT. Performance status divided patients into two clusters which influenced all predicted outcomes in conjunction with age.�ensuremath</pensuremath>ensuremath<pensuremath>Conclusion: XAI techniques delineate the relationship between clinical factors and OC treatment decisions. These techniques identify advanced age as heavily influencing decisions based on our model with a greater role in patients with specific tumour characteristics. This study methodology provides the means for exploring conscious/subconscious bias and interrogating inconsistencies in team-based decision-making within the era of AI-driven decision support.ensuremath</pensuremath>},
note = {For the purpose of open access, the authors have applied a Creative Commons attribution license (CC-BY) to any Author Accepted Manuscript version arising from this submission.},
keywords = {Decision-making, machine learning, Multidisciplinary teams, Oesophageal cancer},
pubstate = {published},
tppubtype = {article}
}
Thavanesan, Navamayooran; Naiseh, Mohammad; Terol, Miguel; Rahman, Saqib Andrew; Hill, Samuel Luke; Parfitt, Charlotte; Walters, Zoë S; Ramchurn, Sarvapali; Markar, Sheraz; Owen, Richard; Maynard, Nick; Azim, Tayyaba; Belkatir, Zehor; Perez, Elvira Vallejos; McCord, Mimi; Underwood, Tim; Vigneswaran, Ganesh
The oesophageal cancer multi-disciplinary tool: a co-designed, externally validated, machine learning clinical decision support system Journal Article
In: EClinicalMedicine, vol. 89, pp. 103527, 2025, (For the purposes of open access, the authors have applied a Creative Commons attribution license (CC-BY) to any Author Accepted Manuscript version arising from this submission.).
@article{soton506614,
title = {The oesophageal cancer multi-disciplinary tool: a co-designed, externally validated, machine learning clinical decision support system},
author = {Navamayooran Thavanesan and Mohammad Naiseh and Miguel Terol and Saqib Andrew Rahman and Samuel Luke Hill and Charlotte Parfitt and Zoë S Walters and Sarvapali Ramchurn and Sheraz Markar and Richard Owen and Nick Maynard and Tayyaba Azim and Zehor Belkatir and Elvira Vallejos Perez and Mimi McCord and Tim Underwood and Ganesh Vigneswaran},
url = {https://eprints.soton.ac.uk/506614/},
year = {2025},
date = {2025-09-01},
journal = {EClinicalMedicine},
volume = {89},
pages = {103527},
abstract = {ensuremath<pensuremath>BACKGROUND: The oesophageal cancer (OC) multi-disciplinary team (MDT) operates under significant pressures, handling complex decision-making. Machine learning (ML) can learn complex decision-making paradigms to improve efficiency, consistency, and cost if trained and deployed responsibly. We present an externally validated ML-based clinical decision support system (CDSS) designed to predict OC MDT treatment decisions and prognosticate palliative scenarios, co-designed using Responsible Research and Innovation (RRI) principles.ensuremath</pensuremath>ensuremath<pensuremath>METHODS: Clinicopathological data collected from 1931 patients between 4th September 2009, and 8th November 2022 were used to test and validate models trained through four ML algorithms to predict curative and palliative treatment pathways along with palliative prognosis. 953 OC cases treated at University Hospitals Southampton (UHS) were used to train ML models which were externally validated on 978 OC cases from Oxford University Hospitals (OUH). Model performance was evaluated using Area Under Curve (AUC) for treatment classifiers and calibration curves for survival models. A parallel RRI program at the University of Southampton (United Kingdom) combining clinician interviews and inter-disciplinary workshops was conducted between 16.3.23 and 23.5.24. The RRI program comprised a group of 17 domain experts comprising programmers, computer scientists, clinicians and patient representatives to allow end-users to contribute towards the co-design of the CDSS user interface.ensuremath</pensuremath>ensuremath<pensuremath>FINDINGS: Cohorts differed in baseline characteristics, with the external cohort (OUH) being younger, having better performance status, and a higher prevalence of pulmonary and vascular disease. Despite these differences, on internal validation (UHS cohort) mean AUCs for the primary treatment model were: MLR 0.905 $±$ 0.048, XGB 0.909 $±$ 0.044 and RF 0.883 $±$ 0.059 (k = 5 cross-validation) and MLR 0.866 (95% CI 0.866-0.867), XGB 0.863 (0.862-0.864), RF 0.863 (0.867-0.868) on bootstrapped resampling. For the palliative classifier, mean AUCs were: MLR 0.805 $±$ 0.096, XGB 0.815 $±$ 0.081 and RF 0.793 $±$ 0.083 (k = 5 cross-validation) and MLR 0.736 (95% CI 0.734-0.737), XGB 0.799 (0.798-0.800), RF 0.781 (0.778-0.782) on bootstrapped resampling. On external validation (OUH cohort), AUCs were MLR 0.894, XGB 0.887 and RF 0.891 for the primary treatment model and MLR 0.711, XGB 0.742 and RF 0.730 for the palliative treatment classifier. Predicted survival probability from the palliative survival model was well calibrated over the first 12 months post-diagnosis in both cohorts. The RRI program provided a collaborative environment leading to valuable modifications to the CDSS including prediction explanations, visual aids for survival and integrated education for users producing a user-friendly and quick to use tool.ensuremath</pensuremath>ensuremath<pensuremath>INTERPRETATION: We present a novel, responsibly developed, externally validated AI CDSS trained to predict oesophageal cancer MDT decisions. It represents the foundations of a transformative application of ML, personalised, consistent and efficient MDT decision-support within OC which aligns to RRI principles.ensuremath</pensuremath>ensuremath<pensuremath>FUNDING: Doctoral Studentship for NT (Institute for Life Sciences (University of Southampton) & University Hospital Southampton), UKRI TAS Pump-Priming Grant (TAS_PP_00167).ensuremath</pensuremath>},
note = {For the purposes of open access, the authors have applied a Creative Commons attribution license (CC-BY) to any Author Accepted Manuscript version arising from this submission.},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Thavanesan, Navamayooran; Farahi, Arya; Parfitt, Charlotte; Belkhatir, Zehor; Azim, Tayyaba; Vallejos, Elvira Perez; Walters, Zoë; Ramchurn, Sarvapali; Underwood, Timothy J.; Vigneswaran, Ganesh
Insights from explainable AI in oesophageal cancer team decisions Journal Article
In: Computers in Biology and Medicine, vol. 180, 2024, (For the purpose of open access, the authors have applied a Creative Commons attribution license (CC-BY) to any Author Accepted Manuscript version arising from this submission.).
@article{soton493238,
title = {Insights from explainable AI in oesophageal cancer team decisions},
author = {Navamayooran Thavanesan and Arya Farahi and Charlotte Parfitt and Zehor Belkhatir and Tayyaba Azim and Elvira Perez Vallejos and Zoë Walters and Sarvapali Ramchurn and Timothy J. Underwood and Ganesh Vigneswaran},
url = {https://eprints.soton.ac.uk/493238/},
year = {2024},
date = {2024-08-01},
journal = {Computers in Biology and Medicine},
volume = {180},
abstract = {ensuremath<pensuremath>Background: clinician-led quality control into oncological decision-making is crucial for optimising patient care. Explainable artificial intelligence (XAI) techniques provide data-driven approaches to unravel how clinical variables influence this decision-making. We applied global XAI techniques to examine the impact of key clinical decision-drivers when mapped by a machine learning (ML) model, on the likelihood of receiving different oesophageal cancer (OC) treatment modalities by the multidisciplinary team (MDT).ensuremath</pensuremath>ensuremath<pensuremath>Methods: retrospective analysis of 893 OC patients managed between 2010 and 2022 at our tertiary unit, used a random forests (RF) classifier to predict four possible treatment pathways as determined by the MDT: neoadjuvant chemotherapy followed by surgery (NACT + S), neoadjuvant chemoradiotherapy followed by surgery (NACRT + S), surgery-alone, and palliative management. Variable importance and partial dependence (PD) analyses then examined the influence of targeted high-ranking clinical variables within the ML model on treatment decisions as a surrogate model of the MDT decision-making dynamic.�ensuremath</pensuremath>ensuremath<pensuremath>Results: amongst guideline-variables known to determine treatments, such as Tumour-Node-Metastasis (TNM) staging, age also proved highly important to the RF model (16.1 % of total importance) on variable importance analysis. PD subsequently revealed that predicted probabilities for all treatment modalities change significantly after 75 years (p < 0.001). Likelihood of surgery-alone and palliative therapies increased for patients aged 75?85yrs but lowered for NACT/NACRT. Performance status divided patients into two clusters which influenced all predicted outcomes in conjunction with age.�ensuremath</pensuremath>ensuremath<pensuremath>Conclusion: XAI techniques delineate the relationship between clinical factors and OC treatment decisions. These techniques identify advanced age as heavily influencing decisions based on our model with a greater role in patients with specific tumour characteristics. This study methodology provides the means for exploring conscious/subconscious bias and interrogating inconsistencies in team-based decision-making within the era of AI-driven decision support.ensuremath</pensuremath>},
note = {For the purpose of open access, the authors have applied a Creative Commons attribution license (CC-BY) to any Author Accepted Manuscript version arising from this submission.},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Multi-agent signal-less intersection management with dynamic platoon formation
AI Foundation Models: initial review, CMA Consultation, TAS Hub Response
The effect of data visualisation quality and task density on human-swarm interaction
Demonstrating performance benefits of human-swarm teaming
Thavanesan, Navamayooran; Naiseh, Mohammad; Terol, Miguel; Rahman, Saqib Andrew; Hill, Samuel Luke; Parfitt, Charlotte; Walters, Zoë S; Ramchurn, Sarvapali; Markar, Sheraz; Owen, Richard; Maynard, Nick; Azim, Tayyaba; Belkatir, Zehor; Perez, Elvira Vallejos; McCord, Mimi; Underwood, Tim; Vigneswaran, Ganesh
The oesophageal cancer multi-disciplinary tool: a co-designed, externally validated, machine learning clinical decision support system Journal Article
In: EClinicalMedicine, vol. 89, pp. 103527, 2025, (For the purposes of open access, the authors have applied a Creative Commons attribution license (CC-BY) to any Author Accepted Manuscript version arising from this submission.).
@article{soton506614,
title = {The oesophageal cancer multi-disciplinary tool: a co-designed, externally validated, machine learning clinical decision support system},
author = {Navamayooran Thavanesan and Mohammad Naiseh and Miguel Terol and Saqib Andrew Rahman and Samuel Luke Hill and Charlotte Parfitt and Zoë S Walters and Sarvapali Ramchurn and Sheraz Markar and Richard Owen and Nick Maynard and Tayyaba Azim and Zehor Belkatir and Elvira Vallejos Perez and Mimi McCord and Tim Underwood and Ganesh Vigneswaran},
url = {https://eprints.soton.ac.uk/506614/},
year = {2025},
date = {2025-09-01},
journal = {EClinicalMedicine},
volume = {89},
pages = {103527},
abstract = {ensuremath<pensuremath>BACKGROUND: The oesophageal cancer (OC) multi-disciplinary team (MDT) operates under significant pressures, handling complex decision-making. Machine learning (ML) can learn complex decision-making paradigms to improve efficiency, consistency, and cost if trained and deployed responsibly. We present an externally validated ML-based clinical decision support system (CDSS) designed to predict OC MDT treatment decisions and prognosticate palliative scenarios, co-designed using Responsible Research and Innovation (RRI) principles.ensuremath</pensuremath>ensuremath<pensuremath>METHODS: Clinicopathological data collected from 1931 patients between 4th September 2009, and 8th November 2022 were used to test and validate models trained through four ML algorithms to predict curative and palliative treatment pathways along with palliative prognosis. 953 OC cases treated at University Hospitals Southampton (UHS) were used to train ML models which were externally validated on 978 OC cases from Oxford University Hospitals (OUH). Model performance was evaluated using Area Under Curve (AUC) for treatment classifiers and calibration curves for survival models. A parallel RRI program at the University of Southampton (United Kingdom) combining clinician interviews and inter-disciplinary workshops was conducted between 16.3.23 and 23.5.24. The RRI program comprised a group of 17 domain experts comprising programmers, computer scientists, clinicians and patient representatives to allow end-users to contribute towards the co-design of the CDSS user interface.ensuremath</pensuremath>ensuremath<pensuremath>FINDINGS: Cohorts differed in baseline characteristics, with the external cohort (OUH) being younger, having better performance status, and a higher prevalence of pulmonary and vascular disease. Despite these differences, on internal validation (UHS cohort) mean AUCs for the primary treatment model were: MLR 0.905 $±$ 0.048, XGB 0.909 $±$ 0.044 and RF 0.883 $±$ 0.059 (k = 5 cross-validation) and MLR 0.866 (95% CI 0.866-0.867), XGB 0.863 (0.862-0.864), RF 0.863 (0.867-0.868) on bootstrapped resampling. For the palliative classifier, mean AUCs were: MLR 0.805 $±$ 0.096, XGB 0.815 $±$ 0.081 and RF 0.793 $±$ 0.083 (k = 5 cross-validation) and MLR 0.736 (95% CI 0.734-0.737), XGB 0.799 (0.798-0.800), RF 0.781 (0.778-0.782) on bootstrapped resampling. On external validation (OUH cohort), AUCs were MLR 0.894, XGB 0.887 and RF 0.891 for the primary treatment model and MLR 0.711, XGB 0.742 and RF 0.730 for the palliative treatment classifier. Predicted survival probability from the palliative survival model was well calibrated over the first 12 months post-diagnosis in both cohorts. The RRI program provided a collaborative environment leading to valuable modifications to the CDSS including prediction explanations, visual aids for survival and integrated education for users producing a user-friendly and quick to use tool.ensuremath</pensuremath>ensuremath<pensuremath>INTERPRETATION: We present a novel, responsibly developed, externally validated AI CDSS trained to predict oesophageal cancer MDT decisions. It represents the foundations of a transformative application of ML, personalised, consistent and efficient MDT decision-support within OC which aligns to RRI principles.ensuremath</pensuremath>ensuremath<pensuremath>FUNDING: Doctoral Studentship for NT (Institute for Life Sciences (University of Southampton) & University Hospital Southampton), UKRI TAS Pump-Priming Grant (TAS_PP_00167).ensuremath</pensuremath>},
note = {For the purposes of open access, the authors have applied a Creative Commons attribution license (CC-BY) to any Author Accepted Manuscript version arising from this submission.},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Thavanesan, Navamayooran; Farahi, Arya; Parfitt, Charlotte; Belkhatir, Zehor; Azim, Tayyaba; Vallejos, Elvira Perez; Walters, Zoë; Ramchurn, Sarvapali; Underwood, Timothy J.; Vigneswaran, Ganesh
Insights from explainable AI in oesophageal cancer team decisions Journal Article
In: Computers in Biology and Medicine, vol. 180, 2024, (For the purpose of open access, the authors have applied a Creative Commons attribution license (CC-BY) to any Author Accepted Manuscript version arising from this submission.).
@article{soton493238,
title = {Insights from explainable AI in oesophageal cancer team decisions},
author = {Navamayooran Thavanesan and Arya Farahi and Charlotte Parfitt and Zehor Belkhatir and Tayyaba Azim and Elvira Perez Vallejos and Zoë Walters and Sarvapali Ramchurn and Timothy J. Underwood and Ganesh Vigneswaran},
url = {https://eprints.soton.ac.uk/493238/},
year = {2024},
date = {2024-08-01},
journal = {Computers in Biology and Medicine},
volume = {180},
abstract = {ensuremath<pensuremath>Background: clinician-led quality control into oncological decision-making is crucial for optimising patient care. Explainable artificial intelligence (XAI) techniques provide data-driven approaches to unravel how clinical variables influence this decision-making. We applied global XAI techniques to examine the impact of key clinical decision-drivers when mapped by a machine learning (ML) model, on the likelihood of receiving different oesophageal cancer (OC) treatment modalities by the multidisciplinary team (MDT).ensuremath</pensuremath>ensuremath<pensuremath>Methods: retrospective analysis of 893 OC patients managed between 2010 and 2022 at our tertiary unit, used a random forests (RF) classifier to predict four possible treatment pathways as determined by the MDT: neoadjuvant chemotherapy followed by surgery (NACT + S), neoadjuvant chemoradiotherapy followed by surgery (NACRT + S), surgery-alone, and palliative management. Variable importance and partial dependence (PD) analyses then examined the influence of targeted high-ranking clinical variables within the ML model on treatment decisions as a surrogate model of the MDT decision-making dynamic.�ensuremath</pensuremath>ensuremath<pensuremath>Results: amongst guideline-variables known to determine treatments, such as Tumour-Node-Metastasis (TNM) staging, age also proved highly important to the RF model (16.1 % of total importance) on variable importance analysis. PD subsequently revealed that predicted probabilities for all treatment modalities change significantly after 75 years (p < 0.001). Likelihood of surgery-alone and palliative therapies increased for patients aged 75?85yrs but lowered for NACT/NACRT. Performance status divided patients into two clusters which influenced all predicted outcomes in conjunction with age.�ensuremath</pensuremath>ensuremath<pensuremath>Conclusion: XAI techniques delineate the relationship between clinical factors and OC treatment decisions. These techniques identify advanced age as heavily influencing decisions based on our model with a greater role in patients with specific tumour characteristics. This study methodology provides the means for exploring conscious/subconscious bias and interrogating inconsistencies in team-based decision-making within the era of AI-driven decision support.ensuremath</pensuremath>},
note = {For the purpose of open access, the authors have applied a Creative Commons attribution license (CC-BY) to any Author Accepted Manuscript version arising from this submission.},
keywords = {},
pubstate = {published},
tppubtype = {article}
}